HOCCLUS2: A Novel Biclustering Algorithm for the Discovery of Meaningful Biological Correlations between microRNAs and their Target Genes

List of downloadable files:

HOCCLUS2 and Required Resources (hocclus2.7z) (Updated on 2016/04/27 with manual thresholds on the minimum number of objects)
Datasets (Datasets.7z)
Original miRTarBase and mirDIP databases (Original_databases.7z)
Results obtained by HOCCLUS2, HOCCLUS, METIS and ROCC (Results.7z)
README

G. Pio, M. Ceci, D. D'Elia, C. Loglisci, D. Malerba, A novel biclustering algorithm for the discovery of meaningful biological correlations between miRNAs and mRNAs, BMC Bioinformatics 14 (Suppl 7), S8

HOCCLUS: Hierarchical and Overlapping Co-Clustering of mRNA:miRNA Interactions

List of downloadable files:

HOCCLUS (hocclus.jar)
METIS
Real Dataset (dataset.zip)
Synthetic Datasets (SyntheticDatasets.zip)
README

G. Pio, M. Ceci, D. D'Elia, C. Loglisci, D. Malerba, Hierarchical and Overlapping Co-Clustering of mRNA:miRNA Interactions, European Conference on Artificial Intelligence (ECAI), 2012

To uncopress .7z files you can download the free tool 7-zip from HERE.