INPUT DESCRIPTION 1) "mouse" folder contains: 1.1) the positive set "pos.txt" 1.2) the unlabelled set "unlab.txt" 2) "human" folder contains: 2.1) the 10 training sets "pos_foldn.txt" (10 fold cross validation) 2.2) the unlabelled set "unlab.txt" 2.3) the 10 testing sets "test_foldn.txt" (10 fold cross validation) 3) "parameters.ini" file contains the allowed parameters with their description OUTPUT DESCRIPTION the application produces a folder with the following contents: a folder for each clustering configuration. Each clustering folder contains: 1) the "AUR@Ks" folder containing the area under recall@k curve values for each step of the IV stage 2) n step folders. Each step folder contains: 2.1) the current model with switched coefficients "switch_coefficient_indexes.model" 2.2) the current score ranking "merged_score_ranking_coefficient_indexes.txt" 2.3) the "rank" folder containing all the possible models for a one-coefficient substitution and their score ranking 3) the "test" folder containing the score ranking of the source, the target and the final hyperplane 4) the "log.txt" file 5) the source hyperplane score ranking 6) the target hyperplane score ranking 7) the source hyperplane model 8) the target hyperplane model 9) the "test.csv" containing the results in terms of area under recall@k 10) the "time.txt" containing the execution time of the current experiment in seconds HOW TO RUN java -jar path-to-biosfer.jar path-to-parameters.ini